Expression, Characterization and Purification of Latcripin-5 from Lentinula edodes Strain C91-3 and its In Vitro Anticancer Activities
Akbar Hussain1, Syed Riaz ud Din1, Kavish Hasnain Khinsar1,
Muhammad Noman Ramzan2, Min Huang1, Anhong Ning1, Xiaoli Wang1, Mintao Zhong1* and Bibi Nazia Murtaza3*
1Department of Microbiology, College of Basic Medical Science, Dalian Medical University, Dalian 116044, PR China
2Department of Biochemistry and Molecular Biology, College of Basic Medical Science, Dalian Medical University, Dalian 116044, PR China
3Department of Zoology, Abbottabad University of Science and Technology, Havelian KPK Pakistan
ABSTRACT
Lentinula edodes C91-3 is an edible mushroom with demonstrated medicinal activity against various types of cancer in vitro and in vivo. The gene for Latcripin-5 (LP-5) was obtained from Lentinula edodes strain C91-3 and inserted into a pET32a (+) vector, which was then, expressed in the Rosetta gami (DE3) strain. The purified LP-5 protein was analyzed using SDS-PAGE and western blot. The optimal solubilization parameters were found to be 0.6 mM IPGT for 6 h incubation at 37℃. The solubilized protein was refolded using a refolding buffer and then dialyzed and concentrated using a dialysis buffer and PEG 20000, respectively. Phyre2 bioinformatics tool was used for protein modelling. The concentrated LP-5 protein was tested for its effect on the viability and cytotoxicity of various cancerous and non-cancerous cell lines using a cell counting kit-8 (CCK-8) assay. The LP-5 protein had the lowest IC50 value against the liver cancer line HepG2, at 58.15 μg/ml. Dose- and time-dependent morphological changes, such as cell shrinkage, blebbing formation, and cell fragmentation, were observed in treated cells. Apoptosis markers were evaluated using qPCR, flow cytometry, and western blot, and it was found that LP-5 protein increased the expression of Bax, Caspass-3, -8, -9, Cytochrome-C, and PARP, while decreasing the expression of Bcl2. Cell cycle arrest was also analyzed through qPCR, flow cytometry. Western blot results showed upregulated p21 and p27while CDK2, CDK4, CDK6, Cycline D1, and Cycline E1 were downregulated. These results suggest that LP-5 protein has potential as an anticancer agent against liver cancer cells.
Article Information
Received 23 April 2023
Revised 02 May 2023
Accepted 17 May 2023
Available online 28 July 2023
(early access)
Published 12 November 2024
Authors’ Contribution
AH and MZ in conceptualization and methodology. SRD, KHK, MNR, MH and AN in data curation. MZ and BNM in writing, review and editing. All authors have read and agreed to the published version of the manuscript.
Key words
Lentinula edodes C91-3, Latcripin-5, Phyre2 bioinformatics tool, Liver cancer, Apoptosis, Cell cycle arrest
DOI: https://dx.doi.org/10.17582/journal.pjz/20230423120401
* Corresponding author: [email protected], [email protected]
0030-9923/2024/0000-3557 $ 9.00/0
Copyright 2024 by the authors. Licensee Zoological Society of Pakistan.
This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
Introduction
Cancer is one of the leading public health issues with the high rate of morbidity and mortality worldwide. According to Global cancer statistics (2020) liver cancer is the 6th commonly diagnosed cancer worldwide and it is account for third leading cause of death (Sung et al., 2021). In 2019, the incidence and mortality rate of liver cancer increased (WHO, 2020). Liver cancer which ranks 5th in terms of global burden and reported as second on the basis of mortality in male population (Siegel et al., 2020). In spite of advancement in liver cancer treatment and prognosis have been reported in recent past years, although the effectiveness is still unsatisfactory needs improvement (Luqmani, 2005). Mushroom natural products and compound has been reported for their pharmacological efficacy against various types of disorders includes cancer (Dias et al., 2012; Harvey, 2008). Medicinal and edible mushroom has been reported to have various potentials i.e., cytotoxic, antiproliferative, and antioxidant (Bassil et al., 2012; Dong et al., 2007; Jiang and Sliva, 2010; Kim et al., 2004; Liu et al., 2009; Thohinung et al., 2010). The mushrooms extracts consist of polysaccharides, proteins, polysaccharide-protein complex, steroids, dietary fibers, and phenols (Ivanova et al., 2014; Joseph et al., 2018; Singh et al., 2016). Lentinula ededes inhabitant of warm and moist climate has been studied for its medicinal effect. Various studies have reported that extracts sterols, lipid, terpenoids, polysaccharide, and mycelia from L. edodes have not only anti-cancer activity but also anti-viral, anti-bacterial, and anti-fungal effects (Resurreccion et al., 2016; Wasser, 2005).
The L. edodes recombinant proteins have been cloned and expressed using a variety of expression techniques (Sakamoto et al., 2006; Wang et al., 2012; Zhao et al., 2000; Zhao and Kwan, 1999). Our research group reported that L. edodes strain C91-3 protein components have anticancer potential both in vivo and in vitro models. For the de novo characterization of the L. edodes strain C91-3 transcriptome, a total of 57 million nucleotides were read and assembled into 18,120 unigene through next-generation sequencing (NGS) (deep solexa/Illumena). Thousands of genes were identified which are still under investigation for various therapeutic applications (Wang et al., 2012; Zhong et al., 2013).
The Latcripin-5 (LP-5) has not been reported for its anti-cancer activity against liver cancer cell lines HepG2. LP-5 protein was obtained through a prokaryotic expression system followed by suitable purification techniques (Din et al., 2020). The aim of this study was to evaluate the anti-cancer role of LP-5 in liver cancer cell line HepG2 and facilitate more effective choice of therapy for liver cancer treatment. This was noted that LP-5 plays a significant role by enhancing cell cycle arrest and apoptosis in liver cancer cell line HepG2.
Materials and Methods
The shiitake mushroom strain of Lentinula edodes C91-3 was obtained from the Chinese general microbiological culture collection center (CGMCC). The bacterial strain of E. coli JM109, PCR cloning kit, Plasmid Purification kit, 3′- full RACE Core Set 2.0, 5′-Ful RACE kit, DNA ligation kit and Molecular enzymes and primers EcoR 1 and Xho1 used in this research project were ordered from Takara, Dalian, China. The expression vector pET32a (+) was purchased from Invitrogen. 6x-Hist-tag monoclonal antibody and horseradish peroxidase-Rabbit Anti-mouse IgG (H+L) was from Proteintech Group, Inc. The bicinchoninic acid (BCA) protein assay kit, was purchased from NaijiangKeyGen Biotech Co. Carbancelline, chloramphenicol, tetracycline, kanamycin sulphate, phenyl methane sulfonyl fluoride and isopropyl β-D-1-thiogalactopyranoside (IPTG) were ordered from Tiagen Biotech Co., LTd. The sypro orange protein gel stain was bought from Sigma Aldrich. The common integrated potato culture medium, Luria Agar and Luria broth were prepared in the Microbiology department Dalian Medical University. Anti-microbial agent (100µg/ml streptomycin, 100 units/ml penicillin), Trypsin with EDTA and without EDTA was purchased from Thermo Fisher scientific; Incwhile the RIPA buffer was from Proteintech. Polyvinylidene fluoride (PVDF) membranes were obtained from Millipore, Billerica. Bcl-2 (12789-1-Ap), Bax (23931-1-Ap), Caspase-3 (19677-1-Ap), Caspase-9 (10380-1-Ap), PARP (13371-1-Ap), p21 (10355-1-Ap), and GAPDH along secondary anti-Rabbit antibodies were bought from Protein-tech (Wuhan, China). Cyclin-D1 (60186-1-Ig) purchased from Thermo Fisher Scientific, Waltan, MA, USA). CDK6 (D4S8S), p21 (12D1), and Cycline-E1 (HE12), mouse antibody along with anti-mouse secondary antibody purchased from cell signaling USA. Annexin V-FITC/PI kit was acquired from Invitrogen.
Bioinformatics analysis of LP5
The nucleotide sequences of LP-5 of Lentinula edodes strain C91-3were analyzed by NCBI database (https://www.ncbi.nlm.nih.gov) (Accession no. KF772202.1) and amino acid sequence with protein ID (AHB815431). Functional domain and structural integrity analysis were studied on European Bioinformatics Institute (EBI) tools (https://https://www.ebi.ac.uk/). ExPASy server were used for determination of theoretical molecular Weight and pI value (MW=44.3Kd and pI value=6.0 (https://web.expasy.org/compute_pi/) (Bjellqvist et al., 1993, 1994). The phyre2 server was used to predict the tertiary structure of the LP-5 functional domain (https://www.sbg.bio.ic.ac.uk/). Using the ExPASy database, the amino acid composition of the LP-5 functional domain was examined (http://www.expasy.org/).
Complimentary DNA synthesis, cloning of LP-5 gene
Total RNA was extracted from L. edodes C91-3 mycelium by Trizol method. Using Oligo 6.0 software, primers were built for the 3′-RACE and 5′-RACE in response to sequencing data. The LP-5 gene was amplified using upstream primer with EcoR1 restriction endonuclease (RE) site (5’-GCGAATTCACCAACAATGCATCCGGTG-3’) and downstream primer with XhoI RE site (5’-GCTCGAGATTACAAGAGCGCTCAGTA-3’). Thirty cycles of PCR reaction were performed under the following conditions: 98°C for 10 sec, 56°C for 10 sec, 72°C for 1 min, 72°C for 5 min, and 4°C for 1 min. The amplified sequence was verified using the ABI PRIMTM 3730XL DNA Sequencer. The Mini BEST 1% Agarose Gel DNA Extraction Ver. 3.0 kit was used to purify amplified complementary DNA. Following the manufacturer’s instructions, the purified clone DNA was inserted into the Eco RI/XhoI sites of the pET32a (+) vector through the Infusion HD Cloning kit. The pET32a (+) vector was successfully introduced into E. coli JM109 competent cells. DNA sequencing was used to confirm positive white colonies. The recombinant plasmid pET32a (+)-LP-5 was extracted and transformed into Rosetta-gami (DE3).
Expression and purification of LP-5
A single colony of transformants was cultured overnight in Luria Broth with antibiotics (chloramphenicol 34 µg/ml, tetracycline 12.5 µg/ml, kanamycin sulphate 15 µg/ml, and carbancelline 100 µg/ml) on an orbital shaker at 37˚C for the preliminary expression of LP-5 until the optical density reached 600 nm. Cultured cells were grouped in to two: control and test groups. IPTG (0.6 mM) was added to the test group only, both control group and tested group were incubated for 6 h at 37oC on the shaker to induced fusion protein expression. Then bacterial culture was centrifuged at 3,824 g at 4oC for 5 min. A single PBS (pH 7.4) wash was performed on the bacterial cell pellet before it was resuspended in lysis buffer. The lysis buffer containing mixture was sonicated as: 10 cycles in ice for 1 min at 4oC for 1 h. Centrifugation was performed on the lysed and sonicated bacterial suspension at 15,297 g for 20 min at 4°C. Both supernatant and sediments were analyzed using Hist-Tagged protein through western blot technique.
Three distinct parameters (IPTG concentration, temperature, and incubation time) were evaluated in order to optimize the LP-5 expression conditions. The culture was treated with various IPTG concentrations (0.05, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, and 1 mM) for different incubation period (1, 2, 3, 4, 5 and 6 h) and at 20, 30, 37, 40, and 50°C temperatures, respectively. The optimum expression of LP-5 protein was observed at IPTG concentration (0.6 mM) on 37 °C for 6 h. Each 10 µl supernatant and pellet was analyzed by 12% SDS-PAGE electrophoresis while protein quantification and size were measure through Image Lab Software.
At post lysis the pellet (contained inclusion body) were three times washed with washing buffer at 4 °C on 15,294 g for 20 min followed by reconstitution in double distilled water. Solubilization buffers (20 mM Na3PO4, 20 mM KH2PO4, 20 mM Tris HCl and deionized H2O, and pH 8.0) containing 3M urea were used to dissolve the homogeneous suspension of LP-5 protein containing inclusion bodies (10 mg/ml). Various pH (5, 6, 7, 8, and 9), temperature (24, 20, 4, -20, -40, and -80°C) and solvents (PBS, NaP, Tris, ddH2O and KP) were optimized. Using Ni magnetic beads, (Tomos Biotools Shanghai Co., Ltd., Shanghai, China) the solubilized protein supernatant was stirred for h at 4 °C. Washing buffer (500 mM NaCl, 50 mM Imidazole, 20 mM NaH2PO4, 3M Urea pH 8.0) was applied three times at 4°C to remove unbound proteins. Then samples were washed, and protein was eluted through elution buffer. The BCA technique was used to assess the pure protein content. Protein (10 µl) was screened by 12% SDS-PAGE and western blot.
Refolding of LP-5 functional domain protein
The purified LP-5 functional domain protein was refolded through utilization of four dialysis buffer: Dialysate 1 (2 mM reduced glutathione (GSH) 4 M urea, and 0.2 mM oxidized glutathione (GSSH) and phosphate-buffered saline (PBS), Dialysate 2: (2 mM GSH. 3 M urea, and 0.2 mM GSSG in PBS), Dialysate 3 (0.2mM GSSH and 2 mM GSH in PBS), and Dialysate 4 (PBS) at 4˚C. Each concentration of dialysate was used three times and the dialysate was changed every eight hours.
Dialysis and concentration of LP-5 protein
Refolded LP-5 protein was poured into dialysis membrane (MWCO 14 kDa; Biosharp, Hefei, China) while the dialysis was changed twice at 4°C for 12 h. The dialyzed protein was concentrated using PEG 20,000 (Sigma-Aldrich, Merck Millipore, Darmstadt, Germany), the BCA protein assay kit was used to measure LP-5 quantity and precise band size was determined 12% SDS-PAGE electrophoresis.
Cell culture
Seven human cancerous cells were used i.e., HepG2 (liver cancer), A549 and H1299 (lung cancer), SGC-7901 and BGC-823 (gastric cancer), MDA-MB-231 and MCF-7 (brest cancer) and a single normal cell line HaCaT (human keratinocytes). Among these cell lines i.e., HepG2, MBA-MD-231, MCF-7, and HaCaT were culture in Dulbecco’s modified Eagle’s medium (DMEM). While A549, H1299, SGC-7901, and BGC-823 were culture in RPMI-1640 medium containing 10% fetal bovine serum (FBS). The culture cells were maintained in 5% carbon dioxide at 37°C and 95% humidity in the incubator.
Cell viability assay
According to the manufacturer’s instructions, the CCK-8 kit was used to assess cell viability, proliferation, and cytotoxicity. Briefly, 1×105 cells were seeded overnight in 96-well plates and cultured at 37°C. After that, cells were exposed to various doses of LP-5 protein (0, 25, 50, 75, 100, 125, and 150 g/ml) and incubated for 24, 48, and 72 h at 37oC. Cells were finally incubated for 4 hs at 37°C with 10 µl of CCK-8 reagent applied to each well of 96-well plates. After incubation, the absorbance was measured at 450 nm via microplate reader. Cell viability was calculated using the formula below.

Colony formation assay
The LP-5 was applied to the 1×103 liver cancer cells on a 6-well plate in several concentrations (0, 75, 100, and 125µg/ml). After 15 days of incubation at 37°C and 5% CO2 under 95% humidified atmosphere. The cells were subsequently rinsed three times with PBS, fixed for a half-h in a 4% paraformaldehyde (PFA) solution, and stained for 5 min with Giemsa strain. The colonies of cultured cells were observed and counted under the microscope.
Western blotting
The liver cancer cell lines HepG2 control and treated with LP-5 at concentrations: 75, 100, and 125µg/ml were incubated for 48 h then gently rinsed with ice-cold PBS. RIPA buffer was used to lyses the cells and extract the protein. The extracted proteins were quantified with a BCA kit. Thirty microgram (30µg/ml) protein was added to each well of SDS-PAGE gel (12%) then transferred to the polyvinylidene fluoride (PVDF) membrane. The next step is to block PVDF membrane by incubating in 1xTBST with 5% skimmed milk for 2 h at room temperature. Then PVDF membranes were washed and incubated with primary antibodies at 4 °C. that secondary antibody were added to the membranes and incubated for two hs at room temperature after three rounds of 1x TBST washing. After adding the ECL the blot were then subjected to chemiluminescent gel imaging device for visualisation (ChemiDcoTM XRS Imager Bio-Rad).
Apoptosis analysis by flowcytometry
The liver cancer cell lines were treated with LP-5 for 48 hs, after treatment the cells were washed with PBS. The collected cells were stained with PI and Annexin V-FITC according to the instructions of manufacturer. The apoptosis rate was calculated using a FACS-Calibur Cytometer (BD Accuri C6 Biosciences, Heidelberg, Germany).
Cell cycle arrest by flowcytometry
The liver cancer cells (Control and LPS-5 treated) were collected after 48 h and washed with PBS, the cells were then incubated overnight at 4°C in 70% ethanol for fixation. After fixation the Cells (1x106 cells/ml) were collected and incubated for 30 min at 37°C. Propidium Iodide50 µg/ml and RNase 5µ g/mL RNase cell were added to cells. Samples were analyzed by using FACS-Calibur Cytometer.
Quantitive polymerase chain reaction (q-PCR)
The cell cycle and apoptosis regulatory mRNA expression were determined by q-PCR. Total RNA was extracted from LP-5 treated and control group cells after 48 h of treatment with IC50 concentration through TRIzol method according to standard protocols. Using a Transgene reverse transcriptase reagent kit with gDNA removal agent, 1 µg of RNA was utilized to produce cDNA. The cDNA was quantified through RT master mix (Transgene) using a real-time PCR system (Step One TM Applied, Singapore). For SYBER reverse transcription, the procedure was as: 15 min at 42°C, 5 sec at 85°C, 30 sec at 94°C, 40x (94°C for 5 second, 60°C for 15 sec, 72°C for 10 sec). The reaction was performed in triplicate, while GAPDH was used as internal control. Using the 2- Δcct approach, the relative gene expression of mRNA was determined.
Statistical analysis
The statistical analysis was performed using Graph Pad Prism 5.0 and Microsoft Excel 2007 software. Test of significance i.e. One-way analysis of variance (ANOVA), Tukey’s multiple comparison was applied. Linear regression was calculated for the half-maximal inhibitory concentration (IC50) of LP-5.
Results
Structural analysis of LP-5
For modelling, the 3-dimensional structure of the LP-5 phyre2 server was used, which uses the Markov method to generate a model based on published structure and use it as a template. The structure of LP-5 was developed by providing a sequence of amino acids to the phyre2 server under intense mode. Phyre2 server used hydrolase protein as a template based on sequence identity and maximum coverage and generated a protein structure with maximum confidence (Fig. 1A). The structure generated via phyre2 was further referred to by minimizing the energy via YASARA energy minimization software, Ramachandran plot was used. The secondary structure revealed the presence of 7 beta-hairpin loops, which houses 10 beta-sheets and 1 gamma turn. 11 beta-sheets and 1 gamma turn exist outside of the beta-hairpin loop (Fig. 1B). Validation of 3D structure generated via phyre2 server through Ramachandran plot. More than 90% residues were favoured region and 8.2% were in allowed region. Plot on left side showing all residues combine while smaller right side plot shows major amino acids on phi and psi scale (Fig. 1C).
LP-5 vector construction
The agarose gel electrophoreses results shown that the target LP-5 gene band was noted at 681bp position (Fig. 2A). Successful digestion was carried out and analyzed via agarose gel electrophoresis. The band was observed at 6.4kbp after double digestion which showed a complete and successful construction of LP-5 vector (Fig. 2B).
Various parameters were considered for the optimal expression of LP-5, which included temperature, IPTG concentration, and induction times. The growth of E. coli was carried out in a range of temperature from 20, 30, 37, 40 and 50˚C and while optimum growth was noted at 37˚C (Fig. 3A). At 37˚C, the optimal IPTG concentration and time of induction were determined. 0.6mM IPTG concentration was found optimal across the range 0.05, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9 and 1 mM concentration (Fig. 3B). Furthermore, the induction and expression of LP-5 was at maximum at 6 h of time duration across 1, 2, 3, 4, 5, and 6 h of time period (Fig. 3C). At these optimal conditions cell were collected, lysed, and centrifuged. The pellet containing inclusion bodies (IBs) were analyzed for further analysis to confirm the induce and uninduced LP-5 protein (Fig. 3D).
Solubilzation of LP-5 inclusion bodies (IBs)
LP-5 protein was obtained from IBs. Various temperatures were used in studies ranging from 20, 24, 04, -20, -40 and -80˚C. The LP-5 protein was observed to have the maximum solubility on -80˚C (Fig. 4A). The different pH was used in the study range i.e., 5, 6, 7, 8, and 9. The best and efficient solubility was observed of inclusion bodies at 8.0 pH (Fig. 4B). Various solvents were used for the solubility of LP-5 protein. Results indicated that the buffer consisting of 3M Urea, 20mM Tris-HCl under pH 8.0 was the best solubilized medium to elute the LP-5 proteins from IBs (Fig. 4C).
Purification and refolding of LP-5 protein
Nickel magnetic beads were used to purify the LP-5 protein the binding buffer (500 mM NaCl, 20 mM NaH2PO4, 5 mM Imidazole, 3M Urea pH 8.0) was used for binding of protein at 4oC under constant shaking condition. Elution buffer (20 mM NaH2PO4, 500 mM NaCl, 500 mM Imidazole, 3M Urea pH 8.0) was used to elute His-tagged LP-5 protein. After eluting the His-Tag LP-5 protein the band was observed at 44.3 KDa. The LP-5 protein was also confirmed by western blot and expected band of 44.3KDa size was observed (Fig. 4D). The protein was properly refold and then expressed in the active form. In our study the mild solubilzation condition were used to preserve the active structure of the LP-5 protein for in vitro refolding. PEG 20,000 was used to obtained concentrated refolded protein (Fig. 4E). This concentrated protein was extensively used in our study for different biological assays.
Anticancer activity of LP-5
The CCK-8 assay was performed to evaluate the cytotoxic effect of LP-5 in panel of cancerous and a normal cells lines (HepG2, A549, H1299, SGC-7901, BGC-823, MCF-7, MDA-MB-231 and HaCat) with varying concentration of LP-5 ranging from 0 to 150 ug/ml for 48 h IC50 values were calculated for all cell lines. IC50 of LP-5 was 58.1ug/ml for Liver cancer HepG2 cell line which was lower among the other cancerous and normal cell lines. Similarly, LP-5 inhibited cell proliferation (50%) in normal cell line i.e., IC50 value 201.1 ug/ml which is higher than HepG2 (Fig. 5A). The CCk-8 assay was performed for cell viability for HepG2 liver cancer cell lines at three various time period (0, 24, 48 and 72 h) and also in dose dependent manner of LP-5 ranging from 0, 25, 50, 75, 100, 125 and 150ug/ml and the minimum viable cell was noted in 125 and 150 ug/ml (Fig. 5B). Cell proliferation assay was used to assess the rate