Review Article
Emerging Threats of Extended Spectrum Beta-Lactamase and Virulent Escherichia coli in Global Livestock Farming
Adedamola David Adesanya1, Itunuoluwa Oyelayo1,2, Adeola D. Ayanyinka1,2, Adedayo Simeon Okediji1, Opaleye O1,2, Ojurongbe O1,2 and Olugbenga A. Olowe1,2*
1Department of Medical Microbiology and Parasitology, College of Health Sciences, Ladoke Akintola University of Technology, P.M.B, 4000, Ogbomoso, Oyo State, Nigeria; 2Centre for Emerging and Reemerging Infectious Diseases, Ladoke Akintola University of Technology, P.M.B, 4000, Ogbomoso, Oyo State, Nigeria.
Abstract | ESBL-producing and virulent Escherichia coli that have appeared in livestock farming worldwide are increasingly endangering both public health and food systems. Because these strains resist several antibiotics, including third-generation cephalosporins and fluoroquinolones, the choices for drug treatment are limited in both animals and people. Zoonotic diseases are spread in modern times due to overcrowding of farms, antibiotic use and inadequate security, letting animals, food and the environment all share germs. This review article explores key pathogenic types of E. coli are present, such as: STEC, ETEC and EPEC and their importance in animals. It stresses that horizontal gene transfer helps resistance spread and supports using One Health to link antibiotic stewardship, higher surveillance and alternative ways to handle diseases in tackling these growing problems.
Received | March 18, 2025; Accepted | July 08, 2025; Published | September 02, 2025
*Correspondence | Olugbenga A. Olowe, Department of Medical Microbiology and Parasitology, College of Health Sciences, Ladoke Akintola University of Technology, P.M.B, 4000, Ogbomoso, Oyo State, Nigeria; Email: [email protected]
Citation | Adesanya, A.D., I. Oyelayo, A.D. Ayanyinka, A.S. Okediji, O. Opaleye, O. Ojurongbe and O.A. Olowe. 2025. Emerging threats of extended spectrum beta-lactamase and virulent Escherichia coli in global livestock farming. Advanced Analytical Pathology, 1: 84-101.
DOI | https://dx.doi.org/10.17582/journal.aap/2025/1.84.101
Keywords | Extended-spectrum beta-lactamase (ESBL), Virulent Escherichia coli, Antimicrobial resistance (AMR), Livestock farming, One health approach
Copyright: 2025 by the authors. Licensee ResearchersLinks Ltd, England, UK.
This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
Introduction
The worldwide food security system depends on livestock farming for its provision of crucial protein products including meat with additional servings of milk and eggs for an expanding human population. Animal-derived product demand growth triggered widespread adoption of intensive farming systems that boosted production yet created three major health concerns and a new threat from antimicrobial resistance (Smith et al., 2015a). The economic burden of AMR in livestock is substantial, with losses attributed to decreased animal productivity, increased veterinary costs, and trade restrictions, all of which compromise agricultural sustainability and strain both local and global economies. This escalating financial impact underscores the urgent need for coordinated AMR mitigation strategies within animal production systems.
Overview of antimicrobial resistance (AMR) and its implications
Since antibiotics are frequently and mostly used in animal farms for growth and disease control, animal agriculture has helped spread resistant bacteria. These Escherichia coli are dangerous because they can resist several medications from different classes. These bacteria create big problems for doctors by reducing treatment choices and helping to transfer resistance genes among many microbes. Not only can these strains cause disease in animals, but they often carry the ability to spread to humans too. Emerging resistant E. coli strains have been proven by science to reduce how well antimicrobial drugs work in treating different organisms (Marshall and Levy, 2011).
The threats from virulent E. coli strains further intensify because enterohemorrhagic (EHEC) strain and enteropathogenic (EPEC) strain and enterotoxigenic (ETEC) strain cause severe infections between human populations while affecting animal hosts. For public health safety the zoonotic capabilities of these bacteria create additional risks especially when human-animal contact happens frequently and hygiene practices are insufficient (Green et al., 2018). For example, the medical facilities of Nigeria experience an escalating trend of ESBL-producing E. coli and Klebsiella species which demonstrates antibiotic β-lactam resistance thus requiring immediate and novel monitoring and control policies (Olowe et al., 2015). Nigeria’s relevance in the global context stems from its status as the most populous country in Africa and a major hub for regional trade and animal production, making it a critical focal point for surveillance and containment of antimicrobial-resistant pathogens that may disseminate across borders.
Objectives of the review
The review evaluates ESBL-producing and virulent E. coli in livestock farming by studying their prevalence in addition to genetic mechanisms and transmission pathways as well as their worldwide effects. The observations emphasize the immediate necessity to establish effective control strategies which reduce the dangers of these pathogens.
ESBL-Producing Escherichia coli in Livestock Farming
Mechanisms of resistance
Definition and enzyme activity: Bacterial strains of ESBL-producing E. coli create enzymes which break down major classes of beta-lactam antibiotics alongside third-generation cephalosporins (Bradford, 2017). Resistance genes that bacteria acquire exist on plasmids as well as integrons and transposons to enable horizontal transfer in the microbial communities within animal intestines (Carattoli, 2009). The extensive occurrence of ESBL-producing E. coli in animal agriculture creates poor therapeutic opportunities while raising the risk of human food-borne transmission (Schmid et al., 2019). Livestock farming plays a critical role as a reservoir for these resistance genes, facilitating their maintenance and dissemination through close animal-human interactions and environmental contamination, thereby amplifying the potential for widespread transmission across species and ecosystems.
Genetic basis of resistance: Plasmids, integrons, and transposons
The main genes responsible for ESBL resistance include bla_CTX-M, bla_SHV and bla_TEM which produce beta-lactamase enzymes with distinct substrate ranges (Bush and Bradford, 2020). Plasmids together with other mobile genetic elements house these resistance genes which facilitate quick resistance trait spread between bacterial species. The chemical properties of ESBLs cause effective antibiotic resistance by breaking down the beta-lactam ring structure in antibiotics thus permitting surviving bacteria (Rawat and Nair, 2019).
The long-term presence and wide dissemination of ESBL-producing E. coli occurs due to bacterial mechanisms which enable resistance gene transfer. Studies at Ado-Ekiti in Nigeria revealed ESBL-producing E. coli strains exist in livestock populations according to molecular data which show these bacteria possess mobile genetic elements allowing them to pass resistance genes to other microbes (Olowe et al., 2019). The research illustrates livestock plays a major role as a reservoir for AMR so strict bio-security measures must be implemented in animal farming operations.
Transmission pathways
Horizontal gene transfer (HGT) among bacteria: Horizontal gene transfer (HGT) acts as the main mechanism for AMR spread because it enables bacteria to receive resistance genes using conjugation and transformation as well as transduction. HGT occurs frequently between bacterial populations because of the high density of animals in containment as well as their utilization of common feeding systems and exposure to contaminated environmental spaces (Van Hoek et al., 2011; Partridge et al., 2018).
Zoonotic transmission to humans
Both ESBL-producing and virulent E. coli pose zoonotic risks through various transmission routes:
Various transmission pathways enable resistant E. coli (Asshown in Figure 1) to move from animals to humans by means of direct encounters between people and animals as well as through tainted food and environmental exposures. Clinical studies conducted in southwestern Nigeria have demonstrated a direct connection between antimicrobial-resistant E. coli strains present in animals and humans as identified through analytical studies (Olowe et al., 2020). Surveillance programs that unite human and animal populations should exist to monitor resistant pathogen transmissions between different species. E. coli zoonotic infections originating from virulent strains present serious risks that develop into severe conditions including (HUS) mostly affecting children and people with impaired immune systems (Havelaar et al., 2015).
Environmental dissemination
The worldwide antibiotic resistance crisis results from antibiotic-resistant bacteria which escape livestock facilities through manure runoff and wastewater emissions and airborne bacteria spread. The bacteria can survive in water bodies together with agricultural soils along with wild animal populations which makes containment actions more difficult (Van Hoek et al., 2011) As shown in Figure 2.
Prevalence and distribution
Geographical distribution: Warner rates of ESBL-producing E. coli in livestock differ widely across different regions because of varying antimicrobial use restrictions and bio-security practices as well as enforcement programs. Figure 3 shows different regions and Patterns of Esbls in Livestock.
Species-specific prevalence
Key findings
1. Different species of livestock show different levels of resistance.
ESBL-producing E. coli is found more or less in different groups of livestock. Compared with sheep and chickens, more cases of these diseases occur in cattle and pigs.
2. There Are the Most Pig Cases in Canada:
Among ESBL-E bacteria, pigs were identified as having the most E. coli isolates. As a result, pigs may be one of the main animals where resistant bacteria are found.
3. A moderate number of the parasite is found in some cattle.
Primary observations from cattle reveal that ESBL-producing E. coli is less frequently passed from animals than from pigs.
4. Sheep and chickens have shown fewer examples of the disease in tests.
As both sheep and chickens have a low infection rate, they are thought to suffer from the disease differently than cattle and some other animals.
5. What Things Affect Public Health and Food Safety?
Since a greater number of resistant organisms are found in pig and cattle, there should be special surveillance and plans to minimize the danger to people who are most likely to catch resistant diseases through them.
Virulent Escherichia coli Strains in Livestock
The existence of virulent (E. coli) strains which affect livestock produces substantial disruptions for animal health and food safety as well as worldwide public health concerns. Pathogens of E. coli have acquired molecular adaptations through evolution to establish themselves in host organisms while avoiding the immune response and producing diseases. Research shows the growing frequency of these strains in food production animals demonstrates how livestock operations connect with AMR as they spread between animals and humans.
E. coli strains possess virulent factors which create extra risks to food security as well as animal wellness because of their dangerous attributes. The STEC isolates collected in Abeokuta, Nigeria displayed dual genotypic and phenotypic resistance which prompted worries about their ability to trigger significant human infections including HUS according to Olowe et al. (2023). The need for routine virulent E. coli strain screening in livestock becomes crucial to stop food-borne outbreak occurrences.
Pathotypes and virulence factors
Numerous virulence mechanisms allow pathogenic E. coli strains to receive separate classifications into different pathotypes. The range of pathogenic Escherichia coli strains found in livestock production includes EHEC and EPEC and ETEC because these pathogens have major health consequences for both animals and humans.
Enterohemorrhagic Escherichia coli (EHEC)
E. coli O157:H7 together with other strains from the Enterohemorrhagic E. coli pathotype stand as the most dangerous zoonotic pathogens. Shiga toxins (Stx1 and Stx2) released by these bacteria destroy the intestinal epithelial barrier and cause hemorrhagic colitis and the human illness in affected patients (Paton and Paton, 2020). The asymptomatic EHEC reservoir in specific cattle populations spreads pathogenic bacteria to water supplies and rangelands and food products including livestock feed resulting in the transmission of the infection from animals throughout the food trade chain (Havelaar et al., 2015).
Enteropathogenic Escherichia coli (EPEC)
EPEC stands as a primary pathogen that causes diarrhea in both livestock calves together with piglets. EPEC lacks Shiga toxin production because its pathogenic mechanism involves the Locus of Enterocyte Effacement (LEE) pathogenicity island to perform intimate binding with intestinal epithelial cells (Nataro and Kaper, 2017). EPEC utilizes the virulence factor intimin for host cell attachment along with creating attaching and effacing (A/E) lesions that results in mal-absorption and diarrhea with weight loss effects that hurt livestock production (Fairbrother and Nadeau, 2019).
Enterotoxigenic Escherichia coli (ETEC)
The pathogen Enterotoxigenic E. coli act as a primary agent that triggers neonatal diarrhea in livestock which mainly affects young piglets and calves. ETEC pathotype creates LT together with ST enterotoxins which affect intestinal fluid balance thus causing critical dehydration alongside electrolyte disturbances (Smith et al., 2015b). The combination of ETEC infections leads to both high mortality numbers in animals and costly economic losses in the production of livestock. ETEC can transmit between humans because contaminated drinking water and food enable the pathogen to pass between animal species and people (Liu et al., 2016).
Virulence factors
The capability of virulent E. coli strains to cause illness results from several harmful elements which combine toxins with adhesion proteins alongside immune system avoidance techniques.
Mechanisms of pathogenicity and host interaction
The pathogenesis of virulent E. coli strains includes two major mechanisms in addition to their ability to evade the immune system through three different pathways.
Impact on Livestock Health
Clinical symptoms in animals
Animals with virulent E. coli show various clinical signs because of different pathotypes and infection severity.
Economic Implications
Public Health Impact
Zoonotic implications
Role in human infections and food-borne illnesses: The dangerous E. coli strains present a critical animal to human disease transmission threat through both direct and indirect transmission sources. The basic ways humans get infected with E. coli start from these three sources: (Scallan et al., 2011).
Epidemiological evidence linking livestock to human outbreaks
Food-borne illness outbreaks occur frequently because E. coli strains spread from livestock. Health experts have used cattle farm-caused North American and European E. coli O157:H7 outbreaks to stress the critical importance of strong bio-security protocols (Havelaar et al., 2015).The developing regions have experienced numerous multi-state ETEC infection outbreaks caused by agricultural community drinking water contamination (Liu et al., 2016). EPEC strains that originated from livestock have exhibited genetic links with strains which cause illness in humans thus representing a possible transmission pathway between species (Johnson et al., 2018).
One health approaches
Under the one health framework all aspects of human health stand connected to those of animals and the environment. The threat management of virulent E. coli in livestock demands the following three components: (World Health Organization, 2022).
Contributing factors to the emergence of ESBL and virulent E. coli
The worldwide expansion of virulent ESBL-producing E. coli strains that affect livestock results from several connected aspects between antibiotic misuse and farm management practices and environmental contamination and international trade networks. The combination of these factors makes E. coli strains effective at remaining in multiple hosts while spreading resistances and pathogenic attributes which compromises animal and human health (Liu et al., 2016).
Antibiotic usage in livestock
Antibiotic use without discretion across the livestock industry acts as a main cause of AMR formation while advancing the spread of ESBL-producing E. coli strains.
Excessive antibiotic administration in livestock production serves as a major AMR because that results in drug-resistant E. coli strains. Research isolates the Tet genes which cause tetracycline resistance in E. coli isolates thus demonstrating that antibiotic applications in livestock management significantly maintain antibiotic-resistant bacteria populations (Olowe et al., 2013). The control of antibiotic misuse combined with new non-antibiotic animal disease management approaches is necessary to counter this health problem.
Farm practices and environmental factors
SBL-producing E. coli with virulence properties become widely established and dispersed through intensive farm animal operations together with inadequate waste control systems.
Global trade and movement of livestock
Live animals together with animal products function as crucial elements enhancing the worldwide dissemination and intercontinental spread of ESBL-producing and virulent E. coli.
Livestock trade and international dissemination of resistant strains
The global trade in livestock coupled with agribusiness supply chain developments leads to wider antimicrobial-resistant E. coli spread because organisms and contaminated food items easily cross international borders. International reports confirm ESBL-producing E. coli exists within exported meat products and dairy items thereby demanding increased global surveillance and better food safety controls. The effort to control antimicrobial-resistant E. coli becomes more complex because of unfettered animal transfers in trade systems and inadequate quarantine rules and traceability system shortcomings (Economou and Gousia, 2015).
A rise in global animal protein demand makes it essential to use one health strategies that combine proper antibiotic management and environmental protection measures with international governance to manage ESBL and virulent E. coli risks in livestock.
Current Mitigation Strategies
Multiple practices for controlling (ESBL)-producing and virulent Escherichia coli (E. coli) in livestock need to combine antibiotic stewardship with regulatory policies alongside alternative disease control strategies and strong surveillance systems. The interventions work toward three goals: Controlling antimicrobial use, decreasing bacterial spread and reducing the threat of resistant and virulent E. coli strains to public health.
Antibiotic stewardship programs
Healthcare organizations implement structured programs known as antimicrobial stewardship programs to enhance antibiotic treatment strategies while fighting AMR development and maintaining essential medical antibiotics across humans and animals. Denmark alongside the Netherlands and Sweden has executed antimicrobial stewardship programs which reduced AMR within their livestock populations according to Carlet et al. (2012).
Reducing antibiotic use and promoting alternatives
Alternative strategies to maintain gut health and disease prevention:
Policy and regulatory interventions
National and international guidelines: Various national and international regulations determine how effectively countries fight antibiotic resistance based on their rules and law enforcement capabilities along with farming regulations.
Success stories in AMR control
Several national programs have proven that strategic policy implementation alongside effective interventions successfully decrease antibiotic resistance occurrences in livestock populations. (Carlet et al., 2012).
Surveillance and monitoring
Systematic AMR pattern tracking aims to discover bacterial evolution early through assessments that enable proper interventions. Multiple international organizations have established connected surveillance systems which improve the sharing of AMR data between different countries together with resistant pathogen monitoring.
Advancements in genomic surveillance
WGS and metagenomics analytics have become game-changers for AMR surveillance because they deliver microscopic details about bacterial development and resistance gene movement and infection source identification.
Modern genomic tools with traditional epidemiological data create enhanced capabilities to follow and control ESBL-producing and virulent E. coli outbreaks in livestock farms.
Challenges and gaps
Numerous obstacles prevent the advancement of efforts to control ESBL-producing and virulent E. coli in livestock populations. The battle against ESBL-producing and virulent E. coli in livestock faces obstacles relating to insufficient funding and deficient policies together with limited population understanding and missing knowledge about disease spread patterns. The achievement of sustainable solutions requires the solution of these barriers (Mshana et al., 2021).
Limited resources in low- and middle-income countries (LMICs)
Adequate funding scarcity persists as a main obstacle which interferes with AMR prevention efforts in livestock sectors of Low- and Middle-Income Countries. Smallholder farming communities encounter problems because they cannot get appropriate veterinary medical attention and laboratory diagnostic testing or antimicrobial stewardship programs (Mshana et al., 2021). The limited availability of monitoring systems for AMR trends results in inadequate knowledge about both the distribution rates and molecular makeup of ESBL E. coli while insufficient regulatory systems enable free antibiotic sales and incorrect animal medication practices.
Because of multiple healthcare problems and economic problems governments face challenges to place AMR control measures as top priorities. Successful control of ESBL-producing E. coli in livestock is impractical without continuous funding support from outside organizations and international partnerships (Grace et al., 2020).
Resistance to policy implementation in intensive farming systems
Intensive animal farming depends on antibiotics both for promoting growth and protecting against diseases while treating illnesses so policies regarding restrictions become tough to enforce. The staffs working at large-scale commercial farms show resistance to antimicrobial regulations because they believe it will result in economic decline together with production decreases (Speksnijder et al., 2015). The enforcement of antimicrobial policies remains a challenge for numerous low- and middle-income nations even though high-income nations have successfully eliminated antibiotic growth promotion restrictions.
Pharmaceutical companies and those involved in the livestock industry use their power to slow down the development of stricter antimicrobial policies. Public health needs alongside sustainability require policymakers to manage economic challenges when creating policies (Figure 7).
Lack of public awareness about AMR and zoonotic risks
The insufficient public knowledge about ESBL E. coli hinders effective control efforts because it impacts farmers and consumers and also the policymakers. The public including farmers and livestock handlers demonstrate limited knowledge concerning antimicrobial misuse consequences and the path of E. coli in zoonotic transmission (Mather et al., 2019). Without proper education efforts the practice of incorrect antibiotic administration and weak farm bio-security continues to persist.
The demand for antibiotic-free livestock products mainly stems from consumers so they actively participate in creating this market. The public shows limited knowledge regarding health risks which stem from eating meat and dairy products containing antibiotics. The public health requires educational methods through various platforms like mass media and schools in order to modify consumer practices regarding antibiotic utilization.
Gaps in research and surveillance
The scientific community continues to exhibit interest in AMR research yet various major gaps exist concerning the molecular processes of E. coli resistance and virulence mechanisms. Studies primarily examine human clinical environments and researchers have conducted fewer investigations about ESBL E. coli’s evolutionary progression in livestock as well as environmental settings (Liu et al., 2022). The ability to track emerging resistant strains becomes challenging because of insufficient surveillance networks which are particularly prominent in resource-poor areas.
Genomic surveillance investments together with data-sharing platforms as well as international cooperative projects are needed to eliminate existing knowledge limitations that prevent global monitoring of AMR trends in livestock farming.
Future Directions and Recommendations
Continuous efforts based on multiple strategies need to control the increasing danger posed by ESBL E. coli in worldwide livestock farming. The successful solutions require elements that link scientific innovation with policy enforcement as well as public engagement and cross-sector collaboration.
Enhanced research on the epidemiology and mechanisms of resistance
A complete surveillance system must exist to monitor antimicrobial-resistant E. coli strains effectively because it enables both tracking of their prevalence and genetic variation. Achieving both systematic screening and genomic characterization revealed key evolutionary patterns of resistant bacteria so that researchers can develop effective intervention methods (Olowe et al., 2019, 2023). The prevention of global resistance and virulence of E. coli strains in livestock requires enhanced regulatory framework together with antibiotic responsible practices alongside investments in new therapeutic techniques for treatment. Research advancements allow the development of intervention strategies which enhance disease monitoring while supporting policymakers in formulating evidence-based policies.
Development of novel antimicrobial agents and alternative therapies
The development of innovative therapeutic options becomes necessary because antibiotics show growing resistance patterns. New strategies for alternative antibiotic use in livestock agriculture consist of three primary areas which are bacteriophage therapy and the employment of probiotics and prebiotics alongside antimicrobial peptides (Santos and Ramos, 2018).
Expanding research into alternative methods followed by their commercial implementation will help decrease antibiotic use in farm animals without harming their wellness or production.
Strengthening the one health framework
One health provides an understanding that health relations between human populations sustain with animal populations and environmental domains. A solution for ESBL E. coli infection needs multiple sectors to work together which includes veterinary medicine together with human healthcare as well as agriculture and environmental sciences (Robinson et al., 2020). Key strategies include:
Public-private partnerships for sustainable livestock farming
Partnerships between government entities and private-sector organizations need to support sustainable livestock farming through collaborative efforts. Key initiatives should include:
These partnerships support both technological growth and healthy food handling while promoting financial growth for environmentally sound livestock farming operations.
Conclusion
Acknowledgement
We would like to express our gratitude to all the staff members of the Department of Medical Microbiology and Parasitology for their invaluable support and cooperation.
Novelty Statement
This review article explores key pathogenic types of E. coli are present, such as: STEC, ETEC and EPEC and their importance in animals. It stresses that horizontal gene transfer helps resistance spread and supports using One Health to link antibiotic stewardship, higher surveillance and alternative ways to handle diseases in tackling these growing problems.
Author’s Contribution
ADA and IO collected and analyzed the data. ADA collected the data online and did further comparative analysis. ASO designed the review and wrote the manuscript. OO edited the manuscript and OAO supervised activities. All authors read and approved the final version of the manuscript.
Generative AI or AI-assisted Technology Statement
The author(s) declare that no Genrative AI was used in the creation of this manuscript.
Conflict of interest
The authors have declared no conflict of interest.
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